IL_5NDW_422

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AAUAAGGA*UUUU

Length

12 nucleotides

Bulged bases

5NDW|1|6|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDW|1|6|A|1223
5NDW|1|6|A|1224
5NDW|1|6|U|1225
5NDW|1|6|A|1226
5NDW|1|6|A|1227
5NDW|1|6|G|1228
5NDW|1|6|G|1229
5NDW|1|6|A|1230
*
5NDW|1|6|U|1257
5NDW|1|6|U|1258
5NDW|1|6|U|1259
5NDW|1|6|U|1260

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A

Chain c2

40S ribosomal protein S12

Chain e1

Ubiquitin-40S ribosomal protein S31