IL_5NDW_441

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGCU*AAGA*G

Length

9 nucleotides

Bulged bases

5NDW|1|6|A|1756

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDW|1|6|C|1644
5NDW|1|6|G|1645
5NDW|1|6|C|1646
5NDW|1|6|U|1647
*
5NDW|1|6|A|1753
5NDW|1|6|A|1754
5NDW|1|6|G|1757
5NDW|1|6|A|1756
*
5NDW|1|6|G|1757

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain d3

40S ribosomal protein S23-A

Chain e0

40S ribosomal protein S30-A

Chain q1

60S ribosomal protein L41-A