IL_5NDW_472

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UCCG*UG

Length

6 nucleotides

Bulged bases

5NDW|1|5|C|1016, 5NDW|1|5|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDW_472 not in the Motif Atlas

Geometric match to IL_3IWN_004

Geometric discrepancy: 0.2179

The information below is about IL_3IWN_004

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

5NDW|1|5|U|1015
5NDW|1|5|C|1016
5NDW|1|5|C|1017
5NDW|1|5|G|1018
*
5NDW|1|5|U|1034
5NDW|1|5|G|1035

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m0

60S ribosomal protein L10

Chain m1

60S ribosomal protein L11-B

Chain sM

Suppressor protein STM1