IL_5NG8_009

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUUAGUAG*CGAAAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_009 not in the Motif Atlas

Geometric match to IL_4WF9_009

Geometric discrepancy: 0.0804

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5NG8|1|AA|C|241
5NG8|1|AA|U|242
5NG8|1|AA|U|243
5NG8|1|AA|A|244
5NG8|1|AA|G|245
5NG8|1|AA|U|246
5NG8|1|AA|A|247
5NG8|1|AA|G|248
*
5NG8|1|AA|C|256
5NG8|1|AA|G|257
5NG8|1|AA|A|258
5NG8|1|AA|A|259
5NG8|1|AA|A|260
5NG8|1|AA|U|261
5NG8|1|AA|G|262

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L35

Chain AJ

50S ribosomal protein L15