IL_5NG8_015

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_015 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.0975

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

5NG8|1|AA|A|581
5NG8|1|AA|G|582
5NG8|1|AA|A|583
5NG8|1|AA|G|584
*
5NG8|1|AA|U|597
5NG8|1|AA|G|598
5NG8|1|AA|A|599
5NG8|1|AA|U|600

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L13

Chain AO

50S ribosomal protein L20