IL_5NG8_020

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5NG8|1|AA|G|846, 5NG8|1|AA|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_020 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0847

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

5NG8|1|AA|G|719
5NG8|1|AA|A|720
5NG8|1|AA|A|721
5NG8|1|AA|A|722
5NG8|1|AA|C|723
*
5NG8|1|AA|G|844
5NG8|1|AA|A|845
5NG8|1|AA|G|846
5NG8|1|AA|A|847
5NG8|1|AA|U|848
5NG8|1|AA|A|849
5NG8|1|AA|G|850
5NG8|1|AA|C|851

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L4

Chain AJ

50S ribosomal protein L15