IL_5NG8_045

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUGAGUAG*UGAAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_045 not in the Motif Atlas

Geometric match to IL_4WF9_048

Geometric discrepancy: 0.0815

The information below is about IL_4WF9_048

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5NG8|1|AA|G|1300
5NG8|1|AA|U|1301
5NG8|1|AA|G|1302
5NG8|1|AA|A|1303
5NG8|1|AA|G|1304
5NG8|1|AA|U|1305
5NG8|1|AA|A|1306
5NG8|1|AA|G|1307
*
5NG8|1|AA|U|2038
5NG8|1|AA|G|2039
5NG8|1|AA|A|2040
5NG8|1|AA|A|2041
5NG8|1|AA|A|2042
5NG8|1|AA|U|2043
5NG8|1|AA|C|2044

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L4

Chain AQ

50S ribosomal protein L22

Chain AZ

50S ribosomal protein L32