IL_5NG8_087

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_087 not in the Motif Atlas

Geometric match to IL_4WF9_093

Geometric discrepancy: 0.1246

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5NG8|1|AA|C|2493
5NG8|1|AA|C|2494
5NG8|1|AA|A|2495
5NG8|1|AA|A|2496
5NG8|1|AA|G|2497
*
5NG8|1|AA|C|2507
5NG8|1|AA|G|2508
5NG8|1|AA|A|2509
5NG8|1|AA|C|2510
5NG8|1|AA|G|2511

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L36

Chain AK

50S ribosomal protein L16