IL_5NG8_125

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GGAAG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_125 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.2549

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5NG8|1|Aa|G|454
5NG8|1|Aa|G|455
5NG8|1|Aa|A|456
5NG8|1|Aa|A|457
5NG8|1|Aa|G|458
*
5NG8|1|Aa|C|491
5NG8|1|Aa|G|492
5NG8|1|Aa|G|493
5NG8|1|Aa|U|494
5NG8|1|Aa|A|495
5NG8|1|Aa|C|496

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ad

30S ribosomal protein S4

Chain Ap

30S ribosomal protein S16