IL_5NG8_133

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUGAAAGCC*GAGGGUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|Aa|G|612
5NG8|1|Aa|U|613
5NG8|1|Aa|G|614
5NG8|1|Aa|A|615
5NG8|1|Aa|A|616
5NG8|1|Aa|A|617
5NG8|1|Aa|G|618
5NG8|1|Aa|C|619
5NG8|1|Aa|C|620
*
5NG8|1|Aa|G|636
5NG8|1|Aa|A|637
5NG8|1|Aa|G|638
5NG8|1|Aa|G|639
5NG8|1|Aa|G|640
5NG8|1|Aa|U|641
5NG8|1|Aa|C|642

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ad

30S ribosomal protein S4

Chain Ah

30S ribosomal protein S8

Chain Ap

30S ribosomal protein S16

Chain Aq

30S ribosomal protein S17