IL_5NG8_152
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NG8_152 not in the Motif Atlas
- Geometric match to IL_4LFB_047
- Geometric discrepancy: 0.1085
- The information below is about IL_4LFB_047
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_68118.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 29
Unit IDs
5NG8|1|Aa|G|1072
5NG8|1|Aa|U|1073
5NG8|1|Aa|C|1074
*
5NG8|1|Aa|G|1203
5NG8|1|Aa|U|1204
5NG8|1|Aa|C|1205
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Ac
- 30S ribosomal protein S3
- Chain Ae
- 30S ribosomal protein S5
- Chain Aj
- 30S ribosomal protein S10
- Chain An
- 30S ribosomal protein S14 type Z
- Chain Av
- Ribosome hibernation promotion factor
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