IL_5NG8_160

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_160 not in the Motif Atlas

Geometric match to IL_4V9F_072

Geometric discrepancy: 0.2839

The information below is about IL_4V9F_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

5NG8|1|Aa|C|1417
5NG8|1|Aa|A|1418
5NG8|1|Aa|C|1419
*
5NG8|1|Aa|G|1502
5NG8|1|Aa|A|1503
5NG8|1|Aa|A|1504
5NG8|1|Aa|G|1505

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Al

30S ribosomal protein S12

Chain Av

Ribosome hibernation promotion factor