IL_5NG8_196
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NG8_196 not in the Motif Atlas
- Geometric match to IL_4WF9_031
- Geometric discrepancy: 0.0794
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NG8|1|BA|G|901
5NG8|1|BA|A|902
5NG8|1|BA|G|903
5NG8|1|BA|G|904
5NG8|1|BA|U|905
5NG8|1|BA|A|906
5NG8|1|BA|G|907
*
5NG8|1|BA|C|960
5NG8|1|BA|G|961
5NG8|1|BA|A|962
5NG8|1|BA|A|963
5NG8|1|BA|U|964
5NG8|1|BA|G|965
5NG8|1|BA|C|966
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BK
- 50S ribosomal protein L16
- Chain BU
- 50S ribosomal protein L27
- Chain BX
- 50S ribosomal protein L30
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