Loop IL_5NG8

3D structure

PDB id: 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
Description: The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.76 Å

Loop

Sequence: GCGAAGCGUGCGAUUGGAUUGCACGUC*GGGAGAAGACAUUGUGUCUUCGAGUCGUU
Length: 56 nucleotides
Bulged bases: 5NG8|1|BA|A|1489, 5NG8|1|BA|A|1497, 5NG8|1|BA|U|1503
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5NG8|1|BA|G|1485
5NG8|1|BA|C|1486
5NG8|1|BA|G|1487
5NG8|1|BA|A|1488
5NG8|1|BA|A|1489
5NG8|1|BA|G|1490
5NG8|1|BA|C|1491
5NG8|1|BA|G|1492
5NG8|1|BA|U|1493
5NG8|1|BA|G|1494
5NG8|1|BA|C|1495
5NG8|1|BA|G|1496
5NG8|1|BA|A|1497
5NG8|1|BA|U|1498
5NG8|1|BA|U|1499
5NG8|1|BA|G|1500
5NG8|1|BA|G|1501
5NG8|1|BA|A|1502
5NG8|1|BA|U|1503
5NG8|1|BA|U|1504
5NG8|1|BA|G|1505
5NG8|1|BA|C|1506
5NG8|1|BA|A|1507
5NG8|1|BA|C|1508
5NG8|1|BA|G|1509
5NG8|1|BA|U|1510
5NG8|1|BA|C|1511
*
5NG8|1|BA|G|1570
5NG8|1|BA|G|1571
5NG8|1|BA|G|1572
5NG8|1|BA|A|1573
5NG8|1|BA|G|1574
5NG8|1|BA|A|1575
5NG8|1|BA|A|1576
5NG8|1|BA|G|1577
5NG8|1|BA|A|1578
5NG8|1|BA|C|1579
5NG8|1|BA|A|1580
5NG8|1|BA|U|1581
5NG8|1|BA|U|1582
5NG8|1|BA|G|1583
5NG8|1|BA|U|1584
5NG8|1|BA|G|1585
5NG8|1|BA|U|1586
5NG8|1|BA|C|1587
5NG8|1|BA|U|1588
5NG8|1|BA|U|1589
5NG8|1|BA|C|1590
5NG8|1|BA|G|1591
5NG8|1|BA|A|1592
5NG8|1|BA|G|1593
5NG8|1|BA|U|1594
5NG8|1|BA|C|1595
5NG8|1|BA|G|1596
5NG8|1|BA|U|1597
5NG8|1|BA|U|1598

Current chains

Chain BA: 23S ribosomal RNA

Nearby chains

Chain BL: 50S ribosomal protein L17

IL_5NG8_220