IL_5NG8_232

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

5NG8|1|BA|U|1828, 5NG8|1|BA|U|1843, 5NG8|1|BA|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_232 not in the Motif Atlas

Geometric match to IL_7RQB_070

Geometric discrepancy: 0.0711

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5NG8|1|BA|U|1825
5NG8|1|BA|G|1826
5NG8|1|BA|C|1827
5NG8|1|BA|U|1828
5NG8|1|BA|A|1829
5NG8|1|BA|A|1830
5NG8|1|BA|A|1831
*
5NG8|1|BA|U|1840
5NG8|1|BA|G|1841
5NG8|1|BA|A|1842
5NG8|1|BA|U|1843
5NG8|1|BA|G|1844
5NG8|1|BA|U|1845
5NG8|1|BA|A|1846
5NG8|1|BA|U|1847
5NG8|1|BA|A|1848

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain Ba

Small subunit ribosomal RNA; SSU rRNA