IL_5NG8_234

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

5NG8|1|BA|A|1926, 5NG8|1|BA|A|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_234 not in the Motif Atlas

Geometric match to IL_5J7L_315

Geometric discrepancy: 0.2138

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

5NG8|1|BA|U|1868
5NG8|1|BA|G|1869
*
5NG8|1|BA|U|1925
5NG8|1|BA|A|1926
5NG8|1|BA|A|1927
5NG8|1|BA|A|1928

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain Ba

Small subunit ribosomal RNA; SSU rRNA