IL_5NG8_236

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_236 not in the Motif Atlas

Geometric match to IL_4WF9_073

Geometric discrepancy: 0.2523

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5NG8|1|BA|U|1878
5NG8|1|BA|U|1879
5NG8|1|BA|A|1880
5NG8|1|BA|A|1881
5NG8|1|BA|G|1882
*
5NG8|1|BA|C|1914
5NG8|1|BA|G|1915
5NG8|1|BA|A|1916
5NG8|1|BA|A|1917
5NG8|1|BA|G|1918

Current chains

Chain BA

23S ribosomal RNA

Nearby chains