IL_5NG8_238

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

5NG8|1|BA|A|1965, 5NG8|1|BA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_238 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.248

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

5NG8|1|BA|C|1961
5NG8|1|BA|G|1962
5NG8|1|BA|A|1963
5NG8|1|BA|A|1964
5NG8|1|BA|A|1965
5NG8|1|BA|U|1966
5NG8|1|BA|U|1967
5NG8|1|BA|C|1968
5NG8|1|BA|C|1969
5NG8|1|BA|U|1970
5NG8|1|BA|U|1971
5NG8|1|BA|G|1972
*
5NG8|1|BA|C|1988
5NG8|1|BA|C|1989
5NG8|1|BA|C|1990
5NG8|1|BA|G|1991

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain Ba

Small subunit ribosomal RNA; SSU rRNA