IL_5NG8_256

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5NG8|1|BA|G|2603, 5NG8|1|BA|A|2604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_256 not in the Motif Atlas

Geometric match to IL_4WF9_095

Geometric discrepancy: 0.0747

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5NG8|1|BA|C|2537
5NG8|1|BA|U|2538
5NG8|1|BA|C|2539
*
5NG8|1|BA|G|2601
5NG8|1|BA|C|2602
5NG8|1|BA|G|2603
5NG8|1|BA|A|2604
5NG8|1|BA|G|2605

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BZ

50S ribosomal protein L32