IL_5NG8_259

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

5NG8|1|BA|A|2629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_259 not in the Motif Atlas

Geometric match to IL_4V9F_090

Geometric discrepancy: 0.382

The information below is about IL_4V9F_090

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_73464.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5NG8|1|BA|C|2618
5NG8|1|BA|G|2619
*
5NG8|1|BA|C|2628
5NG8|1|BA|A|2629
5NG8|1|BA|G|2630

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2