IL_5NG8_291

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UGAUGAAGGUC*GAUCGUAAAA

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|Ba|U|417
5NG8|1|Ba|G|418
5NG8|1|Ba|A|419
5NG8|1|Ba|U|420
5NG8|1|Ba|G|421
5NG8|1|Ba|A|422
5NG8|1|Ba|A|423
5NG8|1|Ba|G|424
5NG8|1|Ba|G|425
5NG8|1|Ba|U|426
5NG8|1|Ba|C|427
*
5NG8|1|Ba|G|432
5NG8|1|Ba|A|433
5NG8|1|Ba|U|434
5NG8|1|Ba|C|435
5NG8|1|Ba|G|436
5NG8|1|Ba|U|437
5NG8|1|Ba|A|438
5NG8|1|Ba|A|439
5NG8|1|Ba|A|440
5NG8|1|Ba|A|441

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bd

30S ribosomal protein S4