Loop IL_5NG8

3D structure

PDB id: 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
Description: The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.76 Å

Loop

Sequence: CCCAGACAACUAGGAU*AUUUAAAGAGUGCGUAAUAGCUCACUAGUCGAG
Length: 49 nucleotides
Bulged bases: 5NG8|1|AA|A|1090, 5NG8|1|AA|G|1099, 5NG8|1|AA|A|1132, 5NG8|1|AA|U|1138
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5NG8|1|AA|C|1087
5NG8|1|AA|C|1088
5NG8|1|AA|C|1089
5NG8|1|AA|A|1090
5NG8|1|AA|G|1091
5NG8|1|AA|A|1092
5NG8|1|AA|C|1093
5NG8|1|AA|A|1094
5NG8|1|AA|A|1095
5NG8|1|AA|C|1096
5NG8|1|AA|U|1097
5NG8|1|AA|A|1098
5NG8|1|AA|G|1099
5NG8|1|AA|G|1100
5NG8|1|AA|A|1101
5NG8|1|AA|U|1102
*
5NG8|1|AA|A|1124
5NG8|1|AA|U|1125
5NG8|1|AA|U|1126
5NG8|1|AA|U|1127
5NG8|1|AA|A|1128
5NG8|1|AA|A|1129
5NG8|1|AA|A|1130
5NG8|1|AA|G|1131
5NG8|1|AA|A|1132
5NG8|1|AA|G|1133
5NG8|1|AA|U|1134
5NG8|1|AA|G|1135
5NG8|1|AA|C|1136
5NG8|1|AA|G|1137
5NG8|1|AA|U|1138
5NG8|1|AA|A|1139
5NG8|1|AA|A|1140
5NG8|1|AA|U|1141
5NG8|1|AA|A|1142
5NG8|1|AA|G|1143
5NG8|1|AA|C|1144
5NG8|1|AA|U|1145
5NG8|1|AA|C|1146
5NG8|1|AA|A|1147
5NG8|1|AA|C|1148
5NG8|1|AA|U|1149
5NG8|1|AA|A|1150
5NG8|1|AA|G|1151
5NG8|1|AA|U|1152
5NG8|1|AA|C|1153
5NG8|1|AA|G|1154
5NG8|1|AA|A|1155
5NG8|1|AA|G|1156

Current chains

Chain AA: 23S ribosomal RNA

Nearby chains

Chain A4: 50S ribosomal protein L36
Chain AG: 50S ribosomal protein L6

IL_5NG8_339