IL_5NG8_341

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AUAGGCGAAGCGUGCGAUUGGAUUGCACGU*GGAGAAGACAUUGUGUCUUCGAGUCGUUGAUUU

Length

63 nucleotides

Bulged bases

5NG8|1|AA|A|1489, 5NG8|1|AA|C|1495, 5NG8|1|AA|A|1497, 5NG8|1|AA|U|1503, 5NG8|1|AA|A|1580, 5NG8|1|AA|G|1583, 5NG8|1|AA|U|1584, 5NG8|1|AA|G|1585, 5NG8|1|AA|U|1588, 5NG8|1|AA|U|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|AA|A|1481
5NG8|1|AA|U|1482
5NG8|1|AA|A|1483
5NG8|1|AA|G|1484
5NG8|1|AA|G|1485
5NG8|1|AA|C|1486
5NG8|1|AA|G|1487
5NG8|1|AA|A|1488
5NG8|1|AA|A|1489
5NG8|1|AA|G|1490
5NG8|1|AA|C|1491
5NG8|1|AA|G|1492
5NG8|1|AA|U|1493
5NG8|1|AA|G|1494
5NG8|1|AA|C|1495
5NG8|1|AA|G|1496
5NG8|1|AA|A|1497
5NG8|1|AA|U|1498
5NG8|1|AA|U|1499
5NG8|1|AA|G|1500
5NG8|1|AA|G|1501
5NG8|1|AA|A|1502
5NG8|1|AA|U|1503
5NG8|1|AA|U|1504
5NG8|1|AA|G|1505
5NG8|1|AA|C|1506
5NG8|1|AA|A|1507
5NG8|1|AA|C|1508
5NG8|1|AA|G|1509
5NG8|1|AA|U|1510
*
5NG8|1|AA|G|1571
5NG8|1|AA|G|1572
5NG8|1|AA|A|1573
5NG8|1|AA|G|1574
5NG8|1|AA|A|1575
5NG8|1|AA|A|1576
5NG8|1|AA|G|1577
5NG8|1|AA|A|1578
5NG8|1|AA|C|1579
5NG8|1|AA|A|1580
5NG8|1|AA|U|1581
5NG8|1|AA|U|1582
5NG8|1|AA|G|1583
5NG8|1|AA|U|1584
5NG8|1|AA|G|1585
5NG8|1|AA|U|1586
5NG8|1|AA|C|1587
5NG8|1|AA|U|1588
5NG8|1|AA|U|1589
5NG8|1|AA|C|1590
5NG8|1|AA|G|1591
5NG8|1|AA|A|1592
5NG8|1|AA|G|1593
5NG8|1|AA|U|1594
5NG8|1|AA|C|1595
5NG8|1|AA|G|1596
5NG8|1|AA|U|1597
5NG8|1|AA|U|1598
5NG8|1|AA|G|1599
5NG8|1|AA|A|1600
5NG8|1|AA|U|1601
5NG8|1|AA|U|1602
5NG8|1|AA|U|1603

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L17