IL_5NG8_344

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

5NG8|1|AA|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_344 not in the Motif Atlas

Geometric match to IL_4WF9_117

Geometric discrepancy: 0.0751

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

5NG8|1|AA|G|1710
5NG8|1|AA|G|1711
5NG8|1|AA|A|1712
5NG8|1|AA|A|1713
5NG8|1|AA|C|1714
5NG8|1|AA|U|1715
5NG8|1|AA|C|1716
5NG8|1|AA|G|1717
5NG8|1|AA|G|1718
*
5NG8|1|AA|C|2017
5NG8|1|AA|U|2018
5NG8|1|AA|G|2019
5NG8|1|AA|U|2020
5NG8|1|AA|C|2021

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AI

50S ribosomal protein L14