IL_5NG8_348

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAACAUAUG*CAUCUUGAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|Aa|G|458
5NG8|1|Aa|A|459
5NG8|1|Aa|A|460
5NG8|1|Aa|C|461
5NG8|1|Aa|A|462
5NG8|1|Aa|U|463
5NG8|1|Aa|A|464
5NG8|1|Aa|U|465
5NG8|1|Aa|G|466
*
5NG8|1|Aa|C|483
5NG8|1|Aa|A|484
5NG8|1|Aa|U|485
5NG8|1|Aa|C|486
5NG8|1|Aa|U|487
5NG8|1|Aa|U|488
5NG8|1|Aa|G|489
5NG8|1|Aa|A|490
5NG8|1|Aa|C|491

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

30S ribosomal protein S16