IL_5NG8_352

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UAAGCUUAGUUGCCAUCAUUAAGUUGGGCACUCUAAGUUGACUGC*GAGGAAGGUG

Length

55 nucleotides

Bulged bases

5NG8|1|Aa|U|1137, 5NG8|1|Aa|C|1140, 5NG8|1|Aa|U|1145, 5NG8|1|Aa|A|1147, 5NG8|1|Aa|U|1193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|Aa|U|1127
5NG8|1|Aa|A|1128
5NG8|1|Aa|A|1129
5NG8|1|Aa|G|1130
5NG8|1|Aa|C|1131
5NG8|1|Aa|U|1132
5NG8|1|Aa|U|1133
5NG8|1|Aa|A|1134
5NG8|1|Aa|G|1135
5NG8|1|Aa|U|1136
5NG8|1|Aa|U|1137
5NG8|1|Aa|G|1138
5NG8|1|Aa|C|1139
5NG8|1|Aa|C|1140
5NG8|1|Aa|A|1141
5NG8|1|Aa|U|1142
5NG8|1|Aa|C|1143
5NG8|1|Aa|A|1144
5NG8|1|Aa|U|1145
5NG8|1|Aa|U|1146
5NG8|1|Aa|A|1147
5NG8|1|Aa|A|1148
5NG8|1|Aa|G|1149
5NG8|1|Aa|U|1150
5NG8|1|Aa|U|1151
5NG8|1|Aa|G|1152
5NG8|1|Aa|G|1153
5NG8|1|Aa|G|1154
5NG8|1|Aa|C|1155
5NG8|1|Aa|A|1156
5NG8|1|Aa|C|1157
5NG8|1|Aa|U|1158
5NG8|1|Aa|C|1159
5NG8|1|Aa|U|1160
5NG8|1|Aa|A|1161
5NG8|1|Aa|A|1162
5NG8|1|Aa|G|1163
5NG8|1|Aa|U|1164
5NG8|1|Aa|U|1165
5NG8|1|Aa|G|1166
5NG8|1|Aa|A|1167
5NG8|1|Aa|C|1168
5NG8|1|Aa|U|1169
5NG8|1|Aa|G|1170
5NG8|1|Aa|C|1171
*
5NG8|1|Aa|G|1185
5NG8|1|Aa|A|1186
5NG8|1|Aa|G|1187
5NG8|1|Aa|G|1188
5NG8|1|Aa|A|1189
5NG8|1|Aa|A|1190
5NG8|1|Aa|G|1191
5NG8|1|Aa|G|1192
5NG8|1|Aa|U|1193
5NG8|1|Aa|G|1194

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ab

30S ribosomal protein S2

Chain Ag

30S ribosomal protein S7

Chain Ai

30S ribosomal protein S9

Chain Aj

30S ribosomal protein S10

Chain An

30S ribosomal protein S14 type Z