IL_5NG8_360

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUAAG*UGAUGG

Length

11 nucleotides

Bulged bases

5NG8|1|BA|G|1569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_360 not in the Motif Atlas

Geometric match to IL_4WF9_116

Geometric discrepancy: 0.1583

The information below is about IL_4WF9_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25186.4

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

5NG8|1|BA|C|1511
5NG8|1|BA|U|1512
5NG8|1|BA|A|1513
5NG8|1|BA|A|1514
5NG8|1|BA|G|1515
*
5NG8|1|BA|U|1565
5NG8|1|BA|G|1566
5NG8|1|BA|A|1567
5NG8|1|BA|U|1568
5NG8|1|BA|G|1569
5NG8|1|BA|G|1570

Current chains

Chain BA

23S ribosomal RNA

Nearby chains