IL_5NG8_363

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCUUGUACAGGAUAGGUAGGAGCC*GGCGCUGGUGGGAUACUACCCUAGC

Length

49 nucleotides

Bulged bases

5NG8|1|BA|U|2138, 5NG8|1|BA|A|2139, 5NG8|1|BA|G|2143, 5NG8|1|BA|A|2144, 5NG8|1|BA|U|2145, 5NG8|1|BA|A|2153, 5NG8|1|BA|U|2194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|BA|G|2133
5NG8|1|BA|C|2134
5NG8|1|BA|U|2135
5NG8|1|BA|U|2136
5NG8|1|BA|G|2137
5NG8|1|BA|U|2138
5NG8|1|BA|A|2139
5NG8|1|BA|C|2140
5NG8|1|BA|A|2141
5NG8|1|BA|G|2142
5NG8|1|BA|G|2143
5NG8|1|BA|A|2144
5NG8|1|BA|U|2145
5NG8|1|BA|A|2146
5NG8|1|BA|G|2147
5NG8|1|BA|G|2148
5NG8|1|BA|U|2149
5NG8|1|BA|A|2150
5NG8|1|BA|G|2151
5NG8|1|BA|G|2152
5NG8|1|BA|A|2153
5NG8|1|BA|G|2154
5NG8|1|BA|C|2155
5NG8|1|BA|C|2156
*
5NG8|1|BA|G|2186
5NG8|1|BA|G|2187
5NG8|1|BA|C|2188
5NG8|1|BA|G|2189
5NG8|1|BA|C|2190
5NG8|1|BA|U|2191
5NG8|1|BA|G|2192
5NG8|1|BA|G|2193
5NG8|1|BA|U|2194
5NG8|1|BA|G|2195
5NG8|1|BA|G|2196
5NG8|1|BA|G|2197
5NG8|1|BA|A|2198
5NG8|1|BA|U|2199
5NG8|1|BA|A|2200
5NG8|1|BA|C|2201
5NG8|1|BA|U|2202
5NG8|1|BA|A|2203
5NG8|1|BA|C|2204
5NG8|1|BA|C|2205
5NG8|1|BA|C|2206
5NG8|1|BA|U|2207
5NG8|1|BA|A|2208
5NG8|1|BA|G|2209
5NG8|1|BA|C|2210

Current chains

Chain BA

23S ribosomal RNA

Nearby chains