IL_5NO2_020

3D structure

PDB id

5NO2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

5NO2|1|A|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NO2_020 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1866

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5NO2|1|A|U|409
5NO2|1|A|G|410
5NO2|1|A|A|411
5NO2|1|A|A|412
5NO2|1|A|G|413
5NO2|1|A|A|414
5NO2|1|A|A|415
5NO2|1|A|G|416
*
5NO2|1|A|U|427
5NO2|1|A|G|428
5NO2|1|A|U|429
5NO2|1|A|A|430
5NO2|1|A|A|431
5NO2|1|A|A|432
5NO2|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4