IL_5NO2_025

3D structure

PDB id

5NO2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

CG(PSU)GCCAG*CGGUAAUACG

Length

18 nucleotides

Bulged bases

5NO2|1|A|A|532, 5NO2|1|A|U|534, 5NO2|1|A|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NO2|1|A|C|514
5NO2|1|A|G|515
5NO2|1|A|PSU|516
5NO2|1|A|G|517
5NO2|1|A|C|518
5NO2|1|A|C|519
5NO2|1|A|A|520
5NO2|1|A|G|521
*
5NO2|1|A|C|528
5NO2|1|A|G|529
5NO2|1|A|G|530
5NO2|1|A|U|531
5NO2|1|A|A|532
5NO2|1|A|A|533
5NO2|1|A|U|534
5NO2|1|A|A|535
5NO2|1|A|C|536
5NO2|1|A|G|537

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain Z

Small ribosomal subunit biogenesis GTPase RsgA