IL_5NO2_044

3D structure

PDB id

5NO2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GGAAGUUU*GAAUGUGCCUUCGGGAACC

Length

27 nucleotides

Bulged bases

5NO2|1|A|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NO2|1|A|G|1002
5NO2|1|A|G|1003
5NO2|1|A|A|1004
5NO2|1|A|A|1005
5NO2|1|A|G|1006
5NO2|1|A|U|1007
5NO2|1|A|U|1008
5NO2|1|A|U|1009
*
5NO2|1|A|G|1020
5NO2|1|A|A|1021
5NO2|1|A|A|1022
5NO2|1|A|U|1023
5NO2|1|A|G|1024
5NO2|1|A|U|1025
5NO2|1|A|G|1026
5NO2|1|A|C|1027
5NO2|1|A|C|1028
5NO2|1|A|U|1029
5NO2|1|A|U|1030
5NO2|1|A|C|1031
5NO2|1|A|G|1032
5NO2|1|A|G|1033
5NO2|1|A|G|1034
5NO2|1|A|A|1035
5NO2|1|A|A|1036
5NO2|1|A|C|1037
5NO2|1|A|C|1038

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14