IL_5NO2_061

3D structure

PDB id

5NO2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NO2_061 not in the Motif Atlas

Homologous match to IL_4LFB_060

Geometric discrepancy: 0.1869

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5NO2|1|A|G|1416
5NO2|1|A|G|1417
5NO2|1|A|A|1418
5NO2|1|A|G|1419
*
5NO2|1|A|U|1481
5NO2|1|A|G|1482
5NO2|1|A|A|1483
5NO2|1|A|C|1484

Current chains

Chain A

16S ribosomal RNA

Nearby chains