IL_5NQI_001

3D structure

PDB id

5NQI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modification

Experimental method

X-RAY DIFFRACTION

Resolution

0.85 Å

Loop

Sequence

U(5HM)C*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NQI|1|A|U|2650
5NQI|1|A|5HM|2651
5NQI|1|A|C|2652
*
5NQI|1|A|G|2668
5NQI|1|A|G|2669
5NQI|1|A|A|2670

Current chains

Chain A

E.Coli 27-mer SRL RNA

Nearby chains