IL_5NWY_003
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUAAC*GGG
- Length
- 9 nucleotides
- Bulged bases
- 5NWY|1|0|C|48, 5NWY|1|0|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NWY_003 not in the Motif Atlas
- Homologous match to IL_5J7L_003
- Geometric discrepancy: 0.0663
- The information below is about IL_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14177.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NWY|1|0|C|47
5NWY|1|0|C|48
5NWY|1|0|U|49
5NWY|1|0|A|50
5NWY|1|0|A|51
5NWY|1|0|C|52
*
5NWY|1|0|G|359
5NWY|1|0|G|360
5NWY|1|0|G|361
Current chains
- Chain 0
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S12
Coloring options: