IL_5NWY_075

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_075 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2543

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5NWY|1|N|C|274
5NWY|1|N|C|275
5NWY|1|N|U|276
5NWY|1|N|G|277
5NWY|1|N|A|278
5NWY|1|N|A|279
5NWY|1|N|U|280
5NWY|1|N|C|281
*
5NWY|1|N|G|359
5NWY|1|N|U|360
5NWY|1|N|G|361
5NWY|1|N|A|362
5NWY|1|N|G|363

Current chains

Chain N

23S rRNA

Nearby chains