IL_5NWY_077

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

5NWY|1|N|A|504, 5NWY|1|N|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_077 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0788

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

5NWY|1|N|G|481
5NWY|1|N|A|482
5NWY|1|N|A|483
5NWY|1|N|C|484
*
5NWY|1|N|G|496
5NWY|1|N|A|497
5NWY|1|N|G|498
5NWY|1|N|U|499
5NWY|1|N|G|500
5NWY|1|N|A|501
5NWY|1|N|A|502
5NWY|1|N|A|503
5NWY|1|N|A|504
5NWY|1|N|A|505
5NWY|1|N|G|506
5NWY|1|N|A|507
5NWY|1|N|A|508
5NWY|1|N|C|509

Current chains

Chain N

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L22

Chain h

50S ribosomal protein L24