IL_5NWY_113

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

5NWY|1|N|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_113 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1237

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

5NWY|1|N|C|1319
5NWY|1|N|C|1320
5NWY|1|N|A|1321
5NWY|1|N|A|1322
5NWY|1|N|C|1323
*
5NWY|1|N|G|1331
5NWY|1|N|G|1332
5NWY|1|N|G|1333

Current chains

Chain N

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L22

Chain g

50S ribosomal protein L23

Chain s

VemP nascent chain