IL_5NWY_117

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

5NWY|1|N|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_117 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1034

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5NWY|1|N|C|1417
5NWY|1|N|G|1418
5NWY|1|N|A|1419
5NWY|1|N|A|1420
5NWY|1|N|G|1421
*
5NWY|1|N|C|1577
5NWY|1|N|U|1578
5NWY|1|N|A|1579
5NWY|1|N|A|1580
5NWY|1|N|G|1581

Current chains

Chain N

23S rRNA

Nearby chains