3D structure

PDB id
5NWY (explore in PDB, NAKB, or RNA 3D Hub)
Description
2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UG*CAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5NWY_123 not in the Motif Atlas
Homologous match to IL_5J7L_301
Geometric discrepancy: 0.1857
The information below is about IL_5J7L_301
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_00881.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

5NWY|1|N|U|1481
5NWY|1|N|G|1482
*
5NWY|1|N|C|1507
5NWY|1|N|A|1508
5NWY|1|N|A|1509
5NWY|1|N|G|1510

Current chains

Chain N
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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