IL_5NWY_130

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5NWY|1|N|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_130 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0837

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5NWY|1|N|C|1686
5NWY|1|N|G|1687
5NWY|1|N|U|1688
5NWY|1|N|A|1689
5NWY|1|N|A|1690
5NWY|1|N|C|1691
*
5NWY|1|N|G|1696
5NWY|1|N|G|1697
5NWY|1|N|A|1698
5NWY|1|N|G|1699
5NWY|1|N|A|1700
5NWY|1|N|A|1701
5NWY|1|N|G|1702

Current chains

Chain N

23S rRNA

Nearby chains

Chain 0

Small subunit ribosomal RNA; SSU rRNA

Chain P

50S ribosomal protein L2