IL_5NWY_154

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_154 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.0652

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5NWY|1|N|C|2350
5NWY|1|N|G|2351
5NWY|1|N|A|2352
5NWY|1|N|G|2353
*
5NWY|1|N|C|2364
5NWY|1|N|G|2365
5NWY|1|N|A|2366
5NWY|1|N|G|2367

Current chains

Chain N

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L18

Chain j

50S ribosomal protein L27

Chain q

50S ribosomal protein L35