IL_5NWY_155

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

5NWY|1|N|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_155 not in the Motif Atlas

Geometric match to IL_5LYS_008

Geometric discrepancy: 0.3768

The information below is about IL_5LYS_008

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5NWY|1|N|U|2401
5NWY|1|N|U|2402
5NWY|1|N|C|2403
*
5NWY|1|N|G|2414
5NWY|1|N|G|2415

Current chains

Chain N

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L15

Chain o

50S ribosomal protein L33

Chain q

50S ribosomal protein L35