IL_5NWY_160

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_160 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1032

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5NWY|1|N|C|2466
5NWY|1|N|C|2467
5NWY|1|N|A|2468
5NWY|1|N|A|2469
5NWY|1|N|G|2470
*
5NWY|1|N|C|2480
5NWY|1|N|G|2481
5NWY|1|N|A|2482
5NWY|1|N|C|2483
5NWY|1|N|G|2484

Current chains

Chain N

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L16

Chain r

50S ribosomal protein L36