IL_5O2R_009

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUGAAUCA*UGUGAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O2R|1|A|C|274
5O2R|1|A|C|275
5O2R|1|A|U|276
5O2R|1|A|G|277
5O2R|1|A|A|278
5O2R|1|A|A|279
5O2R|1|A|U|280
5O2R|1|A|C|281
5O2R|1|A|A|282
*
5O2R|1|A|U|358
5O2R|1|A|G|359
5O2R|1|A|U|360
5O2R|1|A|G|361
5O2R|1|A|A|362
5O2R|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains