IL_5O2R_070

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O2R_070 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.0954

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5O2R|1|A|U|1864
5O2R|1|A|U|1865
5O2R|1|A|A|1866
5O2R|1|A|G|1867
*
5O2R|1|A|C|1874
5O2R|1|A|G|1875
5O2R|1|A|A|1876
5O2R|1|A|A|1877
5O2R|1|A|G|1878

Current chains

Chain A

23S ribosomal RNA

Nearby chains