IL_5O2R_129

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O2R_129 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1333

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5O2R|1|a|U|409
5O2R|1|a|G|410
5O2R|1|a|A|411
5O2R|1|a|A|412
5O2R|1|a|G|413
5O2R|1|a|A|414
5O2R|1|a|A|415
5O2R|1|a|G|416
*
5O2R|1|a|U|427
5O2R|1|a|G|428
5O2R|1|a|U|429
5O2R|1|a|A|430
5O2R|1|a|A|431
5O2R|1|a|A|432
5O2R|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4