IL_5O2R_166
3D structure
- PDB id
- 5O2R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5O2R_166 not in the Motif Atlas
- Geometric match to IL_4V88_465
- Geometric discrepancy: 0.1604
- The information below is about IL_4V88_465
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5O2R|1|a|G|1405
5O2R|1|a|U|1406
5O2R|1|a|C|1407
*
5O2R|1|a|G|1494
5O2R|1|a|U|1495
5O2R|1|a|C|1496
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain 7
- mRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain v
- Peptide chain release factor RF1
- Chain x
- Transfer RNA; tRNA
Coloring options: