IL_5O2R_178

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGA*UCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUG

Length

78 nucleotides

Bulged bases

5O2R|1|A|G|2112, 5O2R|1|A|U|2118, 5O2R|1|A|G|2124, 5O2R|1|A|U|2132, 5O2R|1|A|G|2159, 5O2R|1|A|C|2164, 5O2R|1|A|G|2168, 5O2R|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O2R|1|A|C|2103
5O2R|1|A|C|2104
5O2R|1|A|U|2105
5O2R|1|A|U|2106
5O2R|1|A|G|2107
5O2R|1|A|A|2108
5O2R|1|A|U|2109
5O2R|1|A|G|2110
5O2R|1|A|U|2111
5O2R|1|A|G|2112
5O2R|1|A|U|2113
5O2R|1|A|A|2114
5O2R|1|A|G|2115
5O2R|1|A|G|2116
5O2R|1|A|A|2117
5O2R|1|A|U|2118
5O2R|1|A|A|2119
5O2R|1|A|G|2120
5O2R|1|A|G|2121
5O2R|1|A|U|2122
5O2R|1|A|G|2123
5O2R|1|A|G|2124
5O2R|1|A|G|2125
5O2R|1|A|A|2126
5O2R|1|A|G|2127
5O2R|1|A|G|2128
5O2R|1|A|C|2129
5O2R|1|A|U|2130
5O2R|1|A|U|2131
5O2R|1|A|U|2132
5O2R|1|A|G|2133
5O2R|1|A|A|2134
5O2R|1|A|A|2135
5O2R|1|A|G|2136
5O2R|1|A|U|2137
5O2R|1|A|G|2138
5O2R|1|A|U|2139
5O2R|1|A|G|2140
5O2R|1|A|G|2141
5O2R|1|A|A|2142
*
5O2R|1|A|U|2149
5O2R|1|A|C|2150
5O2R|1|A|U|2151
5O2R|1|A|G|2152
5O2R|1|A|C|2153
5O2R|1|A|A|2154
5O2R|1|A|U|2155
5O2R|1|A|G|2156
5O2R|1|A|G|2157
5O2R|1|A|A|2158
5O2R|1|A|G|2159
5O2R|1|A|C|2160
5O2R|1|A|C|2161
5O2R|1|A|G|2162
5O2R|1|A|A|2163
5O2R|1|A|C|2164
5O2R|1|A|C|2165
5O2R|1|A|U|2166
5O2R|1|A|U|2167
5O2R|1|A|G|2168
5O2R|1|A|A|2169
5O2R|1|A|A|2170
5O2R|1|A|A|2171
5O2R|1|A|U|2172
5O2R|1|A|A|2173
5O2R|1|A|C|2174
5O2R|1|A|C|2175
5O2R|1|A|A|2176
5O2R|1|A|C|2177
5O2R|1|A|C|2178
5O2R|1|A|C|2179
5O2R|1|A|U|2180
5O2R|1|A|U|2181
5O2R|1|A|U|2182
5O2R|1|A|A|2183
5O2R|1|A|A|2184
5O2R|1|A|U|2185
5O2R|1|A|G|2186

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S11