IL_5O2R_180

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGGAAGGG*CAUUGACGUUAC

Length

22 nucleotides

Bulged bases

5O2R|1|a|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O2R|1|a|G|446
5O2R|1|a|G|447
5O2R|1|a|A|448
5O2R|1|a|G|449
5O2R|1|a|G|450
5O2R|1|a|A|451
5O2R|1|a|A|452
5O2R|1|a|G|453
5O2R|1|a|G|454
5O2R|1|a|G|455
*
5O2R|1|a|C|477
5O2R|1|a|A|478
5O2R|1|a|U|479
5O2R|1|a|U|480
5O2R|1|a|G|481
5O2R|1|a|A|482
5O2R|1|a|C|483
5O2R|1|a|G|484
5O2R|1|a|U|485
5O2R|1|a|U|486
5O2R|1|a|A|487
5O2R|1|a|C|488

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16