IL_5O5J_019

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

5O5J|1|A|U|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O5J_019 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1491

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5O5J|1|A|G|409
5O5J|1|A|G|410
5O5J|1|A|A|411
5O5J|1|A|U|412
5O5J|1|A|G|413
5O5J|1|A|A|414
5O5J|1|A|C|415
5O5J|1|A|G|416
*
5O5J|1|A|U|427
5O5J|1|A|G|428
5O5J|1|A|U|429
5O5J|1|A|A|430
5O5J|1|A|A|431
5O5J|1|A|A|432
5O5J|1|A|C|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4